STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YtfFPutative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620. (321 aa)    
Predicted Functional Partners:
MliC
Putative Membrane-bound lysozyme inhibitor of C-type lysozyme; COG: COG3895.
  
     0.595
ygiN
Antibiotic biosynthesis monooxygenase; COG: COG1359; Pfam: PF03992.
  
     0.565
EFE94832.1
Hypothetical protein.
 
     0.517
EFE94833.1
FAD binding domain protein; COG: COG0277; Pfam: PF01565; InterPro: IPR006094.
       0.500
YdgH_1
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.477
YdgH_2
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.426
WzzB
Chain length determinant protein; COG: COG3765; Pfam: PF02706.
  
     0.405
BhsA_3
Hypothetical protein; Pfam: PF07338; InterPro: IPR010854.
  
     0.404
YfgJ
Hypothetical protein; Pfam: PF07191; InterPro: IPR010807.
  
     0.400
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.