STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94500.1Hypothetical protein. (150 aa)    
Predicted Functional Partners:
EFE94501.1
Hypothetical protein; COG: COG2133; InterPro: IPR011042; 1.1.1.-.
 
    0.907
PtrA_6
Putative coenzyme PQQ biosynthesis protein PqqF; Pfam: PF05193; InterPro: IPR007863.
  
     0.566
EFE95872.1
Hypothetical protein.
  
     0.455
EFE94355.1
Hypothetical protein.
  
     0.438
EFE97183.1
Hypothetical protein.
  
     0.418
EFE96134.1
Hypothetical protein.
  
     0.401
DgoD_2
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.401
EFE95968.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.