STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LuxA_3Luciferase-like monooxygenase; COG: COG2141; Pfam: PF00296; InterPro: IPR011251. (345 aa)    
Predicted Functional Partners:
EFE94520.1
Hypothetical protein; Pfam: PF06684; InterPro: IPR009569.
 
     0.885
catD
Hydrolase, alpha/beta domain protein; COG: COG0596; Pfam: PF00561; InterPro: IPR000073.
 
    0.864
betB
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
 
     0.853
C1-hpah
Flavin reductase-like protein; COG: COG1853; Pfam: PF01613; InterPro: IPR012349.
 
  
 0.842
EFE94517.1
Hypothetical protein; COG: COG5470; Pfam: PF07045; InterPro: IPR010753.
 
     0.665
entF
AMP-binding enzyme; COG: COG1020; Pfam: PF00668,PF00501,PF00550,PF00975; InterPro: IPR010071.
  
 
 0.491
EFE94526.1
Permease, cytosine/purine, uracil, thiamine, allantoin family; COG: COG1457; Pfam: PF02133; InterPro: IPR001248; Belongs to the purine-cytosine permease (2.A.39) family.
       0.466
ssuE
FMN reductase; COG: COG0431; Pfam: PF03358; InterPro: IPR005025.
  
 
 0.463
YdfH_4
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011991.
 
     0.442
ssuC
Putative aliphatic sulfonates transport permease protein SsuC; COG: COG0600; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.419
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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