STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppF3ABC transporter, ATP-binding protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439. (383 aa)    
Predicted Functional Partners:
GsiD_1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
 0.969
GsiC_1
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.957
EFE94540.1
Hypothetical protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439.
    
0.932
dppA7
Tat pathway signal sequence domain protein; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
 
  
 0.890
agaE
FAD dependent oxidoreductase; Pfam: PF01266; InterPro: IPR006076.
 
    0.803
NikB
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
 
  
 0.789
dehII
Haloacid dehalogenase, type II; COG: COG1011; Pfam: PF00702; InterPro: IPR006328.
 
     0.786
EFE94543.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583; InterPro: IPR016181.
 
     0.768
PuuB_2
FAD dependent oxidoreductase; COG: COG0665; Pfam: PF01266; InterPro: IPR006076.
 
    0.713
pdxB-5
4-phosphoerythronate dehydrogenase; COG: COG0111; Pfam: PF02826; InterPro: IPR016040.
 
     0.689
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.