STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hipO2Amidohydrolase; COG: COG1473; Pfam: PF01546,PF07687; InterPro: IPR010168. (377 aa)    
Predicted Functional Partners:
EFE94543.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583; InterPro: IPR016181.
       0.778
pdxB-5
4-phosphoerythronate dehydrogenase; COG: COG0111; Pfam: PF02826; InterPro: IPR016040.
       0.778
agaE
FAD dependent oxidoreductase; Pfam: PF01266; InterPro: IPR006076.
       0.752
GsiC_1
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
  
    0.576
GsiD_1
ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515.
  
    0.572
EFE94540.1
Hypothetical protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439.
  
    0.570
dppF3
ABC transporter, ATP-binding protein; COG: COG1123; Pfam: PF00005; InterPro: IPR003439.
  
    0.570
dapD
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; COG: COG2171; Pfam: PF00132; InterPro: IPR005664; Belongs to the transferase hexapeptide repeat family.
 
  
 0.530
gabT-2
4-aminobutyrate transaminase; COG: COG0160; Pfam: PF00202; InterPro: IPR004632; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.522
PuuB_2
FAD dependent oxidoreductase; COG: COG0665; Pfam: PF01266; InterPro: IPR006076.
 
     0.431
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.