STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lrp_4Transcriptional regulator, AsnC family; COG: COG1522; Pfam: PF01037; InterPro: IPR000485. (168 aa)    
Predicted Functional Partners:
lrp2
Transcriptional regulator, AsnC family; COG: COG1522; Pfam: PF01037; InterPro: IPR000485.
  
     0.773
AcxA
Hydantoinase/oxoprolinase; COG: COG0145; Pfam: PF05378,PF01968; InterPro: IPR002821.
     0.771
gabT-2
4-aminobutyrate transaminase; COG: COG0160; Pfam: PF00202; InterPro: IPR004632; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.571
hyuB
Hydantoinase B/oxoprolinase; COG: COG0146; Pfam: PF02538; InterPro: IPR003692.
 
     0.539
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.496
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.492
agaE
FAD dependent oxidoreductase; Pfam: PF01266; InterPro: IPR006076.
 
    0.491
EFE94548.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583.
       0.472
EFE94543.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583; InterPro: IPR016181.
 
     0.471
pdxB-5
4-phosphoerythronate dehydrogenase; COG: COG0111; Pfam: PF02826; InterPro: IPR016040.
 
     0.464
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.