STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AcxAHydantoinase/oxoprolinase; COG: COG0145; Pfam: PF05378,PF01968; InterPro: IPR002821. (686 aa)    
Predicted Functional Partners:
hyuB
Hydantoinase B/oxoprolinase; COG: COG0146; Pfam: PF02538; InterPro: IPR003692.
 0.999
codA
Amidohydrolase family protein; COG: COG0402; Pfam: PF07969; InterPro: IPR013108.
     
  0.900
EFE94548.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583.
       0.783
Lrp_4
Transcriptional regulator, AsnC family; COG: COG1522; Pfam: PF01037; InterPro: IPR000485.
     0.771
dehII
Haloacid dehalogenase, type II; COG: COG1011; Pfam: PF00702; InterPro: IPR006328.
 
    0.650
agaE
FAD dependent oxidoreductase; Pfam: PF01266; InterPro: IPR006076.
 
    0.506
EFE94543.1
Acetyltransferase, GNAT family; COG: COG0454; Pfam: PF00583; InterPro: IPR016181.
 
     0.477
dppA7
Tat pathway signal sequence domain protein; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
 
     0.465
EFE94574.1
Isochorismatase family protein; Pfam: PF00857; InterPro: IPR000868.
 
     0.423
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.419
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.