STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdmCO-methyltransferase; COG: COG4122; Pfam: PF01596; InterPro: IPR002935. (261 aa)    
Predicted Functional Partners:
DgoT_3
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
       0.773
EFE97499.1
Hypothetical protein; COG: COG0826.
  
  
 0.565
yhbU
Peptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539.
  
  
 0.565
ecs2
Peptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539.
  
  
 0.565
yegQ
Peptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539.
  
  
 0.565
ygdL
ThiF family protein; COG: COG1179; Pfam: PF00899; InterPro: IPR016040.
 
      0.505
entF
AMP-binding enzyme; COG: COG1020; Pfam: PF00668,PF00501,PF00550,PF00975; InterPro: IPR010071.
     
 0.488
EFE96815.1
Methyltransferase domain protein; COG: COG0500; Pfam: PF08241; InterPro: IPR013216.
 
   
 0.482
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.