STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94564.1Putative toxin-antitoxin system, toxin component; Pfam: PF08327. (177 aa)    
Predicted Functional Partners:
CmtR
Transcriptional regulator, ArsR family; COG: COG0640; Pfam: PF01022; InterPro: IPR011991.
 
  
 0.888
YbaA
Hypothetical protein; COG: COG5507; Pfam: PF07237; InterPro: IPR009874.
 
     0.599
AcnR
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
  
     0.515
EFE94560.1
Hypothetical protein.
       0.450
EFE94561.1
Hypothetical protein.
       0.450
EFE94562.1
Hypothetical protein.
       0.450
EFE94810.1
3-demethylubiquinone-9 3-methyltransferase domain protein; COG: COG3865; Pfam: PF06983; InterPro: IPR009725.
 
    0.431
EFE93792.1
Glutathione S-transferase, N-terminal domain protein; COG: COG0625; Pfam: PF02798; InterPro: IPR012335.
  
   
 0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.