STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xdhCXanthine dehydrogenase accessory protein XdhC; COG: COG1975; Pfam: PF02625; InterPro: IPR014308. (257 aa)    
Predicted Functional Partners:
xdhB
Xanthine dehydrogenase, molybdopterin binding subunit; COG: COG4631; Pfam: PF01315,PF02738; InterPro: IPR014309; overlaps another CDS with the same product name.
 
  
 0.980
xdhA
Xanthine dehydrogenase, small subunit; COG: COG4630; Pfam: PF00111,PF01799,PF00941,PF03450; InterPro: IPR014307; overlaps another CDS with the same product name.
 
  
 0.961
guaD
Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family.
 
    0.947
uraH
Hydroxyisourate hydrolase; COG: COG2351; Pfam: PF00576; InterPro: IPR000895; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
     0.729
iorA2
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR012675.
 
  
 0.708
HcrC_1
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR002888.
 
  
 0.706
EFE98038.1
Putative urate catabolism protein; COG: COG0726; Pfam: PF01522.
 
     0.688
iorA
2Fe-2S iron-sulfur cluster-binding domain protein; COG: COG2080; Pfam: PF00111,PF01799; InterPro: IPR002888.
 
  
 0.681
EFE96193.1
Hypothetical protein.
 
  
 0.585
uraD
OHCU decarboxylase.
 
     0.572
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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