STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpADi-heme cytochrome C peroxidase; COG: COG1858; Pfam: PF03150; InterPro: IPR004852. (469 aa)    
Predicted Functional Partners:
YncE
PQQ enzyme repeat protein; COG: COG3391; InterPro: IPR015943.
  
 
 0.703
EFE93491.1
Prophage tail fiber domain protein; Pfam: PF08400; InterPro: IPR013609.
  
 
 0.703
hemN
Coproporphyrinogen dehydrogenase; COG: COG0635; Pfam: PF04055,PF06969; InterPro: IPR004558; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.578
Bmr3_2
Drug resistance MFS transporter, drug:H+ antiporter-2 family; COG: COG0477; Pfam: PF07690; InterPro: IPR004638.
  
  
 0.532
oprG
Outer membrane insertion signal domain protein; COG: COG3047; Pfam: PF03922; InterPro: IPR005618.
   
  
 0.526
clcB
Chloride transporter, ClC family; Probably acts as an electrical shunt for an outwardly- directed proton pump that is linked to amino acid decarboxylation, as part of the extreme acid resistance (XAR) response; Belongs to the chloride channel (TC 2.A.49) family. ClcB subfamily.
       0.509
napH
Ferredoxin-type protein, NapH/MauN family; COG: COG0348; Pfam: PF00037; InterPro: IPR011886.
 
  
 0.451
AdhB_1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.432
napG
MauM/NapG family ferredoxin-type protein; COG: COG1145; Pfam: PF00037; InterPro: IPR004494.
 
  
 0.426
EFE94416.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
  
 0.414
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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