STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94598.1Glyoxalase family protein; Pfam: PF00903. (122 aa)    
Predicted Functional Partners:
EFE94599.1
HTH domain protein; COG: COG2378; Pfam: PF08279; InterPro: IPR013196.
     0.952
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
  
  
 0.565
trbC
type-F conjugative transfer system pilin assembly protein TrbC; InterPro: IPR014113.
  
     0.543
traG
TraG-like protein, domain protein; Pfam: PF07916; InterPro: IPR012931.
  
     0.503
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
 
 0.498
traE
Type IV conjugative transfer system protein TraE; Pfam: PF05309; InterPro: IPR007973.
  
     0.484
traH
TraH protein; Pfam: PF06122; InterPro: IPR010927.
  
     0.468
traN
type-F conjugative transfer system mating-pair stabilization protein TraN; Pfam: PF06986; InterPro: IPR014121.
  
    0.454
traI
Conjugative transfer relaxase protein TraI; COG: COG0507; Pfam: PF08751,PF07057; InterPro: IPR014129.
  
    0.448
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
  
     0.417
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.