STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
malYAminotransferase, class I/II; COG: COG1168; Pfam: PF00155; InterPro: IPR004839. (393 aa)    
Predicted Functional Partners:
metC5
Cys/Met metabolism PLP-dependent enzyme; COG: COG0626; Pfam: PF01053; InterPro: IPR000277.
 
 
 0.923
metB
Cystathionine gamma-synthase; COG: COG0626; Pfam: PF01053; InterPro: IPR011821.
 
 
 0.921
PatB
Aminotransferase, class I/II; COG: COG1168; Pfam: PF00155; InterPro: IPR004839.
  
  
 
0.920
metC
Putative methionine gamma-lyase; COG: COG0626; Pfam: PF01053; InterPro: IPR000277.
 
 
 0.919
metC-2
Cystathionine beta-lyase; COG: COG0626; Pfam: PF01053; InterPro: IPR006233.
 
 
 0.918
metC-3
Cystathionine beta-lyase; COG: COG0626; Pfam: PF01053; InterPro: IPR006233.
 
 
 0.918
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.917
cysK
Pyridoxal-phosphate dependent protein; COG: COG0031; Pfam: PF00291; InterPro: IPR001926.
    
 0.908
cysK-2
Cysteine synthase A; COG: COG0031; Pfam: PF00291; InterPro: IPR001926; overlaps another CDS with the same product name.
    
 0.908
cysB2
Putative cystathionine beta-synthase; COG: COG0031; Pfam: PF00291,PF00571; InterPro: IPR001926.
    
 0.908
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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