STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94608.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
NudK_2
Nudix-type nucleoside diphosphatase, YffH/AdpP family; COG: COG0494; Pfam: PF00293; InterPro: IPR000086.
  
 0.925
GlpR_4
Transcriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036.
 
     0.684
NudK_1
Nudix-type nucleoside diphosphatase, YffH/AdpP family; COG: COG0494; Pfam: PF00293; InterPro: IPR000086.
     0.658
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
   
    0.547
BadR_2
Transcriptional regulator, MarR family; Pfam: PF01047; InterPro: IPR000835.
  
    0.505
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. Belongs to the RNR ribonuclease family. RNase R subfamily.
   
 0.483
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
  
  
 0.433
lysR6
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
  
     0.431
EFE95288.1
NAD dependent epimerase/dehydratase family protein; COG: COG0451; Pfam: PF01370; InterPro: IPR016040.
  
 
   0.426
ycdO
Imelysin; COG: COG2822; Pfam: PF04302; InterPro: IPR007399.
  
     0.421
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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