STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araC4Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313. (305 aa)    
Predicted Functional Partners:
araF
Sugar-binding domain protein; COG: COG1879; Pfam: PF00532; InterPro: IPR001761.
 
   
 0.657
RhaS_7
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
  
 
 0.640
rhaR
AraC-like ligand binding domain protein; Activates expression of the rhaSR operon in response to L- rhamnose.
  
 
 0.631
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
     0.621
mviM3
Oxidoreductase, NAD-binding domain protein; COG: COG0673; Pfam: PF01408,PF02894; InterPro: IPR016040.
  
    0.576
soxS
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
   
 0.553
araH-2
L-arabinose ABC transporter, permease protein AraH; COG: COG1172; Pfam: PF02653; InterPro: IPR001851; Belongs to the binding-protein-dependent transport system permease family.
 
     0.551
araB-2
Ribulokinase; COG: COG1069; Pfam: PF00370,PF02782; InterPro: IPR005929.
  
   
 0.518
Rob_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
     0.504
araG
ABC transporter, ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
       0.477
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.