STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcNDNA-binding helix-turn-helix protein; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR014710. (229 aa)    
Predicted Functional Partners:
PuuR_4
DNA-binding helix-turn-helix protein; Pfam: PF01381,PF07883; InterPro: IPR014710.
  
     0.755
benE
Benzoate transporter; COG: COG3135; Pfam: PF03594; InterPro: IPR004711.
 
     0.672
puuR
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
  
     0.579
tauA
Taurine ABC transporter, periplasmic binding protein; COG: COG4521; Pfam: PF04069; InterPro: IPR010068.
   
    0.514
pspF
Psp operon transcriptional activator; COG: COG1221; Pfam: PF00158,PF02954; InterPro: IPR014317.
   
    0.502
EFE94309.1
Peptidase, S9A/B/C family, catalytic domain protein; COG: COG1505; Pfam: PF02897,PF00326; InterPro: IPR004106.
       0.463
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.