STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhJAuxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG1566; Pfam: PF00529; InterPro: IPR006143; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (258 aa)    
Predicted Functional Partners:
EFE94334.1
Fusaric acid resistance protein conserved region; COG: COG1289; Pfam: PF04632; InterPro: IPR006726.
 
  
 0.892
macB
ABC transporter, ATP-binding protein; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.839
MdtP
Efflux transporter, outer membrane factor lipoprotein, NodT family; COG: COG1538; Pfam: PF02321; InterPro: IPR010131.
 
 
 0.658
OprM
Efflux transporter, outer membrane factor lipoprotein, NodT family; COG: COG1538; Pfam: PF02321; InterPro: IPR010131.
 
 
 0.656
EFE94332.1
Hypothetical protein; Pfam: PF07869; InterPro: IPR012451.
  
  
 0.642
tolC
Type I secretion outer membrane protein, TolC family; COG: COG1538; Pfam: PF02321; InterPro: IPR010130.
  
 
 0.509
tliF
Type I secretion outer membrane protein, TolC family; COG: COG1538; Pfam: PF02321; InterPro: IPR010130.
  
 
 0.509
slyA
Transcriptional regulator, MarR family; COG: COG1846; Pfam: PF01047; InterPro: IPR000835.
 
  
 0.503
bpeB
Putative ATP synthase F0, A subunit; COG: COG0841; Pfam: PF00873; InterPro: IPR004764.
 
   
 0.488
htpX3
Auxiliary transport protein, membrane fusion protein (MFP) family protein; COG: COG0845; Pfam: PF00529; InterPro: IPR006143.
  
     0.486
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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