STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCCopper/zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (173 aa)    
Predicted Functional Partners:
actP
Copper-exporting ATPase; COG: COG2217; Pfam: PF00403,PF00122,PF00702; InterPro: IPR001757.
  
 0.988
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
 0.733
sodA
Superoxide dismutase, Mn/Fe family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.719
sodB
Superoxide dismutase, Mn/Fe family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.719
gpxA
Glutathione peroxidase; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent.
   
 0.651
cyoB
Cytochrome o ubiquinol oxidase, subunit I; COG: COG0843; Pfam: PF00115; InterPro: IPR014207; Belongs to the heme-copper respiratory oxidase family.
    
 
 0.576
EFE95341.1
Hypothetical protein.
  
 
 0.567
YbhB
Raf-like protein; COG: COG1881; Pfam: PF01161; InterPro: IPR008914.
   
   0.555
ahp
Glutaredoxin-family domain protein; COG: COG0678; Pfam: PF08534,PF00462; InterPro: IPR012335.
   
 
 0.554
yhbO
Intracellular protease, PfpI family; COG: COG0693; Pfam: PF01965; InterPro: IPR006286.
  
 
 0.552
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.