STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pueAType I secretion target GGXGXDXXX repeat (2 copies); Pfam: PF00353. (103 aa)    
Predicted Functional Partners:
Inh
Protease inhibitor Inh; Pfam: PF02974; InterPro: IPR003086.
  
 
 0.763
pspB
Outer membrane autotransporter barrel domain protein; COG: COG4625; Pfam: PF00082,PF03797; InterPro: IPR006315.
  
  
 0.628
EFE94337.1
Hypothetical protein.
       0.567
tliD
Type I secretion system ATPase; COG: COG4618; Pfam: PF00005; InterPro: IPR010128.
 
 
 0.467
prtC
Type I secretion membrane fusion protein, HlyD family; COG: COG0845; Pfam: PF00529; InterPro: IPR010129.
 
  
 0.425
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.422
evgS
Response regulator receiver domain protein; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR001638.
  
  
 0.419
BvgS_3
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
  
 0.419
rec
DNA internalization competence protein ComEC/Rec2-like protein; Pfam: PF03772,PF00753; InterPro: IPR004797.
  
  
 0.418
fliC
Flagellin D3 domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
   
 
 0.402
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.