STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lppLipoprotein LPP repeat protein; COG: COG4238; Pfam: PF04728. (78 aa)    
Predicted Functional Partners:
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
 
 
 0.826
hns
DNA-binding protein H-NS; COG: COG2916; Pfam: PF00816; InterPro: IPR001801; Belongs to the histone-like protein H-NS family.
  
    0.797
EFE98159.1
Hypothetical protein; COG: COG3056; Pfam: PF03923; InterPro: IPR005619.
  
     0.760
YciC
Hypothetical protein; Pfam: PF06790; InterPro: IPR009627.
  
     0.760
ompN
Gram-negative porin; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
   
 0.758
EFE97548.1
Hypothetical protein; Pfam: PF06526; InterPro: IPR009491.
  
   
 0.754
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.751
hspQ
Hemimethylated DNA binding domain protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
  
     0.751
ompN4
Gram-negative porin; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
   
 0.750
ompN-2
Outer membrane protein N; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
   
 0.748
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.