STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94418.1Gluconate 2-dehydrogenase flavoprotein; COG: COG2303; overlaps another CDS with the same product name. (294 aa)    
Predicted Functional Partners:
EFE94417.1
Gluconate 2-dehydrogenase flavoprotein domain protein; Overlaps another CDS with the same product name.
     0.994
EFE94419.1
Tat pathway signal sequence domain protein.
 
 
 0.970
EFE94416.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
 
 0.962
AdhB_1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
 
 0.828
EFE96196.1
COG: COG2010; Pfam: PF00034; InterPro: IPR003219.
 
 
 0.757
EFE93285.1
Hypothetical protein; Pfam: PF05785; InterPro: IPR008430.
    
 0.750
AdhB_2
COG: COG1529; Pfam: PF02738,PF00034; InterPro: IPR008274.
 
 
 0.731
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
 
 0.516
EFE98228.1
Hypothetical protein; COG: COG3416.
  
     0.440
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.408
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.