STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94427.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
EFE96176.1
Hypothetical protein.
  
     0.774
EFE94900.1
Hypothetical protein; COG: COG3140; Pfam: PF03701; InterPro: IPR005371; Belongs to the UPF0181 family.
  
     0.774
YceB
Hypothetical protein; Pfam: PF07273; InterPro: IPR010835.
  
     0.773
YnfB
Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.
  
     0.773
bssS
Biofilm formation regulatory protein BssS.
  
     0.772
YfeY_2
Hypothetical protein; Pfam: PF06572; InterPro: IPR010938.
  
   
 0.770
torD
Cytoplasmic chaperone TorD; COG: COG3381; Pfam: PF06192; InterPro: IPR010395.
  
     0.770
pqqL
Peptidase M16 inactive domain protein; COG: COG0612; Pfam: PF00675,PF05193; InterPro: IPR011237.
  
     0.767
EFE96731.1
Hypothetical protein; COG: COG3776; Pfam: PF06611; InterPro: IPR009525.
  
     0.767
EFE96215.1
Hypothetical protein.
  
     0.766
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.