STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (278 aa)    
Predicted Functional Partners:
kduD-2
2-deoxy-D-gluconate 3-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
 0.991
kduD
2-deoxy-D-gluconate 3-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
 
 
 0.974
ogl2
Putative oligogalacturonide lyase; Overlaps another CDS with the same product name.
     
 0.906
uxaC
Glucuronate isomerase; COG: COG1904; Pfam: PF02614; InterPro: IPR003766.
 
  
 0.815
lepB
Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S26 family.
   
    0.806
Ugl
Glycosyl hydrolase, family 88; Pfam: PF07470; InterPro: IPR012341.
 
   
 0.792
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.747
YaeQ
YaeQ protein; COG: COG4681; Pfam: PF07152; InterPro: IPR009822.
   
    0.739
uxaA
SAF domain protein; COG: COG2721; Pfam: PF08666,PF04295; InterPro: IPR007392.
 
  
 0.726
parC
DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
   
    0.692
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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