STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94442.1Hypothetical protein; COG: COG3008; Pfam: PF02470; InterPro: IPR003399. (877 aa)    
Predicted Functional Partners:
pqiA
Integral membrane protein, PqiA family; COG: COG2995; Pfam: PF04403; InterPro: IPR007498.
  
 0.975
pqiA2
Integral membrane protein, PqiA family; COG: COG2995; Pfam: PF04403; InterPro: IPR005219.
 
  
 0.735
EFE94277.1
Hypothetical protein.
  
     0.661
rsmF
NOL1/NOP2/sun family protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
 
     0.653
rcsF
Outer membrane lipoprotein; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family.
  
     0.583
EFE96124.1
yecA family protein; COG: COG3079; Pfam: PF03695; InterPro: IPR005356; Belongs to the UPF0149 family.
 
     0.534
yecM
YecM protein; COG: COG3102; Pfam: PF06185; InterPro: IPR010393.
  
     0.524
EFE95974.1
Hypothetical protein.
  
     0.511
yebR
GAF domain protein; COG: COG1956; Pfam: PF01590.
   
   0.510
EFE94743.1
Zinc carboxypeptidase; COG: COG2866; Pfam: PF00246; InterPro: IPR000834.
  
     0.491
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.