STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutIImidazolonepropionase; COG: COG1228; Pfam: PF01979; InterPro: IPR005920. (452 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
 
 0.998
hutF
Formimidoylglutamate deiminase; COG: COG0402; Pfam: PF01979; InterPro: IPR010252.
 
 
 0.989
hutG
N-formylglutamate deformylase; COG: COG3741; Pfam: PF05013; InterPro: IPR010247.
 
  
 0.969
hutH
Histidine ammonia-lyase; COG: COG2986; Pfam: PF00221; InterPro: IPR005921.
 
  
 0.952
hutH2
Phenylalanine and histidine ammonia-lyase; COG: COG2986; Pfam: PF00221; InterPro: IPR005921.
 
  
 0.952
hutC
Histidine utilization repressor; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR010248.
 
  
 0.951
Ves_1
Hypothetical protein; COG: COG3758; Pfam: PF05962; InterPro: IPR010282.
 
     0.737
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
  
  
 0.627
proX
ABC transporter, substrate-binding protein, QAT family; COG: COG2113; Pfam: PF04069; InterPro: IPR007210.
  
    0.548
EFE94526.1
Permease, cytosine/purine, uracil, thiamine, allantoin family; COG: COG1457; Pfam: PF02133; InterPro: IPR001248; Belongs to the purine-cytosine permease (2.A.39) family.
  
    0.425
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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