STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutGN-formylglutamate deformylase; COG: COG3741; Pfam: PF05013; InterPro: IPR010247. (267 aa)    
Predicted Functional Partners:
hutF
Formimidoylglutamate deiminase; COG: COG0402; Pfam: PF01979; InterPro: IPR010252.
 
 
 0.989
hutI
Imidazolonepropionase; COG: COG1228; Pfam: PF01979; InterPro: IPR005920.
 
  
 0.969
hutC
Histidine utilization repressor; COG: COG2188; Pfam: PF00392,PF07702; InterPro: IPR010248.
 
  
 0.925
fdxH
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
    
  0.901
fdnI
Formate dehydrogenase, gamma subunit; COG: COG2864; Pfam: PF01292; InterPro: IPR006471.
     
  0.900
Ves_1
Hypothetical protein; COG: COG3758; Pfam: PF05962; InterPro: IPR010282.
 
     0.871
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.823
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
     
 0.811
mqo
Malate dehydrogenase (quinone); COG: COG0579; Pfam: PF06039; InterPro: IPR006231.
    
  0.811
ybiK
Asparaginase; COG: COG1446; Pfam: PF01112; InterPro: IPR000246.
    
  0.807
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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