STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94462.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
recE
Exonuclease; Pfam: PF00929.
  
     0.638
EFE95043.1
Hypothetical protein; 3.1.11.-.
  
     0.589
EFE93451.1
Outer membrane porin, OprD family; Pfam: PF03573.
  
     0.578
EFE95088.1
Hypothetical protein.
  
     0.519
pheA2
Putative chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate.
       0.500
EFE95622.1
YfaZ; Pfam: PF07437; InterPro: IPR009998.
  
     0.490
dcuC
Transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family; COG: COG3069; Pfam: PF03606; InterPro: IPR004669.
  
     0.489
ScrY
Hypothetical protein.
  
     0.488
phaG
(R)-3-hydroxydecanoyl-ACP:CoA transacylase family protein.
  
     0.461
FimA_8
Fimbrial protein; Pfam: PF00419; InterPro: IPR000259.
  
     0.460
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.