STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnA-4Glutamate--ammonia ligase, catalytic domain protein; COG: COG0174; Pfam: PF00120; InterPro: IPR014746; Belongs to the glutamine synthetase family. (472 aa)    
Predicted Functional Partners:
PuuB_3
FAD dependent oxidoreductase; COG: COG0665; Pfam: PF01266; InterPro: IPR006076.
 
 
 0.987
PuuB_1
FAD dependent oxidoreductase; COG: COG0665; Pfam: PF01266; InterPro: IPR006076.
 
 
 0.973
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
 
  
 0.944
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
   
 
 0.907
speG
Diamine N-acetyltransferase; COG: COG1670; Pfam: PF00583; InterPro: IPR016181.
     
 0.903
speF
Orn/Lys/Arg decarboxylase, major domain protein; COG: COG1982; Pfam: PF03709,PF01276,PF03711; InterPro: IPR000310.
     
  0.900
speF2
Orn/Lys/Arg decarboxylase, major domain protein; COG: COG1982; Pfam: PF03709,PF01276,PF03711; InterPro: IPR000310; overlaps another CDS with the same product name.
     
  0.900
glnA-3
Glutamate--ammonia ligase, catalytic domain protein; COG: COG0174; Pfam: PF00120; InterPro: IPR014746; Belongs to the glutamine synthetase family.
  
  
 
0.900
puuD
Gamma-glutamyl-gamma-aminobutyrate hydrolase; COG: COG2071; Pfam: PF07722; InterPro: IPR011697.
 
  
 0.836
puuR-2
HTH-type transcriptional regulator PuuR; COG: COG1396; Pfam: PF01381,PF07883; InterPro: IPR013096.
 
  
 0.800
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.