STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YgdR_3Hypothetical protein; Pfam: PF06004; InterPro: IPR010305. (74 aa)    
Predicted Functional Partners:
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.756
EFE94915.1
Hypothetical protein.
  
     0.741
Ail
Putative attachment invasion locus protein; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.711
holE
DNA polymerase III subunit theta; Pfam: PF06440; InterPro: IPR011325.
  
     0.684
tus
DNA replication terminus site-binding protein; Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence; Belongs to the Tus family.
  
     0.661
pgpB
PAP2 family protein; Involved in the modification of the lipid A domain of lipopolysaccharides (LPS). Transfers a phosphate group from undecaprenyl pyrophosphate (C55-PP) to lipid A to form lipid A 1- diphosphate. Contributes to the recycling of undecaprenyl phosphate (C55-P); Belongs to the LpxT phosphotransferase family.
  
     0.634
uspA2
Universal stress family protein; COG: COG0589; Pfam: PF00582; InterPro: IPR014729.
 
     0.609
EFE94171.1
Hypothetical protein.
  
     0.608
viaA
Putative protein ViaA; COG: COG2425.
  
     0.601
EFE97721.1
Hypothetical protein; Pfam: PF07043; InterPro: IPR009760.
   
    0.594
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.