STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94478.1Hypothetical protein; COG: COG3729. (72 aa)    
Predicted Functional Partners:
YciE_2
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
  
 0.744
YciE_1
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
  
 0.738
EFE98138.1
Hypothetical protein; COG: COG3126.
  
    0.553
YciF
Hypothetical protein; COG: COG3685; Pfam: PF05974; InterPro: IPR010287.
 
  
 0.544
ygiN
Antibiotic biosynthesis monooxygenase; COG: COG1359; Pfam: PF03992.
  
     0.457
EFE93785.1
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR001647.
  
     0.453
mtlR
Mannitol operon repressor; COG: COG3722; Pfam: PF05068; InterPro: IPR007761.
  
     0.414
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.