STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94005.1Hypothetical protein. (440 aa)    
Predicted Functional Partners:
EFE94006.1
Phage protein F-like protein; COG: COG2369; Pfam: PF04233.
 
   
 0.954
EFE93996.1
Hypothetical protein.
 
     0.936
EFE94007.1
Putative phage-associated protein, HI1409 family.
 
     0.929
EFE93986.1
Hypothetical protein.
 
     0.913
EFE93988.1
Hypothetical protein.
 
     0.909
EFE94008.1
Phage terminase, large subunit, PBSX family; Pfam: PF04466; InterPro: IPR006701.
 
   
 0.904
EFE93985.1
Hypothetical protein.
 
     0.884
EFE94003.1
Hypothetical protein.
       0.794
EFE94001.1
Hypothetical protein.
       0.791
EFE94004.1
Hypothetical protein.
       0.791
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.