Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFE94005.1Hypothetical protein. (440 aa)    
Predicted Functional Partners:
EFE94006.1
Phage protein F-like protein; COG: COG2369; Pfam: PF04233.
 
   
 0.962
EFE93996.1
Hypothetical protein.
 
     0.938
EFE94007.1
Putative phage-associated protein, HI1409 family.
 
     0.932
EFE93986.1
Hypothetical protein.
 
     0.913
EFE93988.1
Hypothetical protein.
 
     0.909
EFE94008.1
Phage terminase, large subunit, PBSX family; Pfam: PF04466; InterPro: IPR006701.
 
   
 0.908
EFE93985.1
Hypothetical protein.
 
     0.883
EFE94003.1
Hypothetical protein.
       0.807
EFE94004.1
Hypothetical protein.
       0.797
EFE94001.1
Hypothetical protein.
       0.795
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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