STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94012.1Hypothetical protein; COG: COG3179. (207 aa)    
Predicted Functional Partners:
EFE94014.1
Hypothetical protein.
  
    0.843
EFE94013.1
Hypothetical protein; Pfam: PF05449; InterPro: IPR008473.
  
    0.810
EFE94011.1
Hypothetical protein.
       0.773
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
    
 0.677
EFE96610.1
Phage tail tape measure protein, lambda family; COG: COG5281; Pfam: PF06791; InterPro: IPR006431.
  
    0.673
gpw
Putative lysozyme; COG: COG3628; Pfam: PF04965; InterPro: IPR007048.
  
    0.642
EFE97096.1
Phage late control gene D protein (GPD); COG: COG3500; Pfam: PF05954; InterPro: IPR010277.
  
  
 0.612
vtaK
NlpC/P60 family protein; COG: COG1310; Pfam: PF00877; InterPro: IPR000555.
  
    0.600
vtaK2
NlpC/P60 family protein; COG: COG1310; Pfam: PF00877; InterPro: IPR000555.
  
    0.600
gpj
Baseplate J-like protein; COG: COG3948; Pfam: PF04865; InterPro: IPR006949.
  
  
 0.598
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.