STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94065.1Transcriptional regulator, RpiR family; Pfam: PF01418,PF01380. (237 aa)    
Predicted Functional Partners:
BglT
Family 4 glycosyl hydrolase; COG: COG1486; Pfam: PF02056; InterPro: IPR001088.
 
  
 0.651
EFE98258.1
Hypothetical protein; Pfam: PF04492.
  
     0.522
potD
Spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
  
    0.495
LamB_2
Hypothetical protein; Pfam: PF02264; InterPro: IPR003192.
  
     0.426
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
  
 0.409
nagE
PTS system, N-acetylglucosamine-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974.
  
  
 0.409
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.