STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NagKROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600. (261 aa)    
Predicted Functional Partners:
nagE
PTS system, N-acetylglucosamine-specific IIBC component; COG: COG1263; Pfam: PF02378,PF00367,PF00358; InterPro: IPR010974.
  
 0.980
nagA
N-acetylglucosamine-6-phosphate deacetylase; COG: COG1820; Pfam: PF01979; InterPro: IPR003764.
 
 
 0.929
Exo_I
Glycosyl hydrolase family 20, catalytic domain protein; COG: COG3525; Pfam: PF02838,PF00728; InterPro: IPR013781.
 
 
 0.918
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
     
 0.906
nagZ
Glycosyl hydrolase family 3 N-terminal domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily.
    
 0.905
chb-2
Chitobiase; COG: COG3525; Pfam: PF03173,PF02838,PF00728,PF03174; InterPro: IPR013781.
  
 
 0.905
murQ
Putative N-acetylmuramic acid 6-phosphate etherase; COG: COG2103; Pfam: PF01380; overlaps another CDS with the same product name.
    
 0.904
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
 
 0.815
nagC
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
 
     0.778
lolE
Lipoprotein releasing system, transmembrane protein LolE; COG: COG4591; Pfam: PF02687; InterPro: IPR011925.
      0.766
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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