STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagZGlycosyl hydrolase family 3 N-terminal domain protein; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. (341 aa)    
Predicted Functional Partners:
chiC
Chitinase C1; COG: COG3469; Pfam: PF00704,PF00041,PF02839; InterPro: IPR001223; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.914
Exo_I
Glycosyl hydrolase family 20, catalytic domain protein; COG: COG3525; Pfam: PF02838,PF00728; InterPro: IPR013781.
    
 0.908
chb-2
Chitobiase; COG: COG3525; Pfam: PF03173,PF02838,PF00728,PF03174; InterPro: IPR013781.
    
 0.908
NagK
ROK family protein; COG: COG1940; Pfam: PF00480; InterPro: IPR000600.
    
 0.905
thiK
Putative thiamine diphosphokinase; Catalyzes the phosphorylation of thiamine to thiamine phosphate.
  
    0.709
LpoB
Hypothetical protein; COG: COG3417.
  
    0.704
EFE94076.1
Hypothetical protein; COG: COG3150; Pfam: PF05728; InterPro: IPR008886; Belongs to the UPF0227 family.
  
  
 0.656
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
   
 0.639
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
   
 0.582
ampG
Muropeptide transporter; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
   
 0.559
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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