STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE94122.1Hypothetical protein. (125 aa)    
Predicted Functional Partners:
EFE94421.1
Hypothetical protein.
   
    0.643
ftsZ2
PrkA AAA domain protein; COG: COG2766; Pfam: PF08298,PF06798; InterPro: IPR013153.
   
    0.609
EFE95929.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
   
    0.572
EFE94123.1
Hypothetical protein.
       0.547
wrbA
NAD(P)H:quinone oxidoreductase, type IV; COG: COG0655; Pfam: PF00258; InterPro: IPR010089.
   
    0.543
YcaC_1
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
   
    0.540
YcaC_2
Isochorismatase family protein; COG: COG1335; Pfam: PF00857; InterPro: IPR000868.
   
    0.540
fbaB
Deoxyribose-phosphate aldolase; COG: COG1830; Pfam: PF01791; InterPro: IPR013785.
   
    0.518
EFE93357.1
Hypothetical protein.
   
    0.518
ElaB_1
Hypothetical protein; COG: COG4575; Pfam: PF05957; InterPro: IPR010279.
   
    0.517
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.