STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
narK-2Nitrite extrusion protein 1; COG: COG2223; Pfam: PF07690; InterPro: IPR004737. (467 aa)    
Predicted Functional Partners:
narI-2
Respiratory nitrate reductase, gamma subunit; COG: COG2181; Pfam: PF02665; InterPro: IPR003816.
 
 
 0.991
narH-2
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547.
 
 
 0.991
narG2
Nitrate reductase, alpha subunit; COG: COG5013; Pfam: PF04879,PF00384,PF01568; InterPro: IPR006468; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.991
narG
Nitrate reductase, alpha subunit; COG: COG5013; Pfam: PF04879,PF00384; InterPro: IPR006468.
 
 
 0.985
narH
Nitrate reductase, beta subunit; COG: COG1140; Pfam: PF00037; InterPro: IPR006547; overlaps another CDS with the same product name.
 
 
 0.984
narI
Respiratory nitrate reductase, gamma subunit; COG: COG2181; Pfam: PF02665; InterPro: IPR003816.
 
 
 0.984
nirB-2
Nitrite reductase [NAD(P)H], large subunit; COG: COG1251; Pfam: PF07992,PF00070,PF04324,PF03460,PF01077; InterPro: IPR012744; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 
 0.948
nirD
Nitrite reductase [NAD(P)H], small subunit; COG: COG2146; InterPro: IPR012748; overlaps another CDS with the same product name.
 
 
 0.940
nasA
Molybdopterin oxidoreductase; COG: COG0243; Pfam: PF04879,PF00384,PF01568,PF04324; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
 
 0.930
narJ-2
Nitrate reductase molybdenum cofactor assembly chaperone; COG: COG2180; Pfam: PF02613; InterPro: IPR003765.
 
  
 0.919
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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