STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aslAArylsulfatase; COG: COG3119; Pfam: PF00884; InterPro: IPR000917. (525 aa)    
Predicted Functional Partners:
aslB
Anaerobic sulfatase maturase; COG: COG0641; Pfam: PF04055; InterPro: IPR007197.
 
 
 0.930
EFE94159.1
Hypothetical protein.
 
     0.888
EFE94158.1
Hypothetical protein.
 
     0.853
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
 
 
  0.808
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
   
  
 0.770
EFE94154.1
Hypothetical protein; COG: COG1721; Pfam: PF01882.
 
     0.746
batA
Von Willebrand factor type A domain protein; Pfam: PF00092; InterPro: IPR002035.
 
     0.696
EFE94153.1
ATPase family associated with various cellular activities (AAA); COG: COG0714; Pfam: PF07726; InterPro: IPR011703.
 
     0.608
EFE95441.1
Helicase C-terminal domain protein; COG: COG1061; Pfam: PF04851,PF00271; InterPro: IPR014001.
    
 
 0.590
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.582
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.