STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aslBAnaerobic sulfatase maturase; COG: COG0641; Pfam: PF04055; InterPro: IPR007197. (400 aa)    
Predicted Functional Partners:
aslA
Arylsulfatase; COG: COG3119; Pfam: PF00884; InterPro: IPR000917.
 
 
 0.930
EFE94159.1
Hypothetical protein.
 
     0.855
EFE94158.1
Hypothetical protein.
 
     0.848
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
 
     0.828
EFE94154.1
Hypothetical protein; COG: COG1721; Pfam: PF01882.
 
     0.827
batA
Von Willebrand factor type A domain protein; Pfam: PF00092; InterPro: IPR002035.
 
     0.819
EFE94153.1
ATPase family associated with various cellular activities (AAA); COG: COG0714; Pfam: PF07726; InterPro: IPR011703.
  
    0.792
EFE94155.1
Hypothetical protein.
       0.790
ptfA
PTS system fructose IIA component; Pfam: PF03610; InterPro: IPR004701.
  
    0.429
FliY_5
Transglycosylase SLT domain protein; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
  
     0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.