STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YicI_2Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family. (679 aa)    
Predicted Functional Partners:
gph-2
Glycoside/pentoside/hexuronide transporter; COG: COG2211; InterPro: IPR001927.
 
  
 0.801
xynB
Glycosyl hydrolase, family 43; COG: COG3507; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.737
pbg
Beta-galactosidase trimerization domain protein; COG: COG1874; Pfam: PF02449,PF08532,PF08533; InterPro: IPR013781.
 
  
 0.720
lacZ
Beta galactosidase small chain; COG: COG3250; Pfam: PF02837,PF00703,PF02836,PF02929; InterPro: IPR006103; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.694
rhiN
Glycosyl hydrolase, family 88; COG: COG4225; Pfam: PF07470; InterPro: IPR010905.
 
   
 0.620
abf
Glycosyl hydrolase, family 43; COG: COG3940; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
 
     0.614
galA
Glycosyl hydrolase, family 53; COG: COG3867; Pfam: PF07745; InterPro: IPR013781.
  
  
 0.610
BglB_1
Glycosyl hydrolase family 3 N-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915; InterPro: IPR001764; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.602
melA2
Alpha-galactosidase; Pfam: PF02065; InterPro: IPR013785.
 
   
 0.589
bglX
Glycosyl hydrolase family 3 C-terminal domain protein; COG: COG1472; Pfam: PF00933,PF01915; InterPro: IPR002772; Belongs to the glycosyl hydrolase 3 family.
 
   
 0.535
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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