STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RhaS_7Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005. (123 aa)    
Predicted Functional Partners:
rhaR
AraC-like ligand binding domain protein; Activates expression of the rhaSR operon in response to L- rhamnose.
 
0.905
Btr_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR000005.
 
 
 0.793
msmR
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.782
RhaS_5
Transcriptional regulator AraC N-terminal domain protein; COG: COG2207; Pfam: PF06719,PF00165; InterPro: IPR009594.
  
 
 0.751
Rob_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
 
 0.746
AdaA_2
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.722
Rob_3
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR012287.
  
 
 0.710
rob
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165,PF06445; InterPro: IPR010499.
  
 
 0.699
Ada
AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR003313.
  
 
 0.668
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.641
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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