STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhiNGlycosyl hydrolase, family 88; COG: COG4225; Pfam: PF07470; InterPro: IPR010905. (379 aa)    
Predicted Functional Partners:
UidB_2
Hypothetical protein; Pfam: PF07690.
 
    0.796
EFE95430.1
Hypothetical protein; COG: COG4289.
 
     0.717
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.622
YicI_2
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.620
EFE94216.1
Hypothetical protein.
       0.516
Ugl
Glycosyl hydrolase, family 88; Pfam: PF07470; InterPro: IPR012341.
  
     0.486
EFE93806.1
NmrA family protein; Pfam: PF05368.
  
     0.481
abf
Glycosyl hydrolase, family 43; COG: COG3940; Pfam: PF04616; InterPro: IPR006710; Belongs to the glycosyl hydrolase 43 family.
  
     0.474
EFE95364.1
Hypothetical protein.
  
     0.468
melA2
Alpha-galactosidase; Pfam: PF02065; InterPro: IPR013785.
 
   
 0.439
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.