STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UidB_2Hypothetical protein; Pfam: PF07690. (533 aa)    
Predicted Functional Partners:
rhiN
Glycosyl hydrolase, family 88; COG: COG4225; Pfam: PF07470; InterPro: IPR010905.
 
    0.796
EFE95881.1
Hypothetical protein; COG: COG2211.
  
     0.753
UidB_1
Hypothetical protein; COG: COG2211.
  
     0.651
EFE95872.1
Hypothetical protein.
  
     0.615
EFE94216.1
Hypothetical protein.
       0.558
rhaT3
RhaT L-rhamnose-proton symporter family protein; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
 
    0.492
EFE95088.1
Hypothetical protein.
  
     0.469
rpiB2
Ribose/Galactose Isomerase; COG: COG0698; Pfam: PF02502; InterPro: IPR003500.
 
     0.430
YicI_1
Glycosyl hydrolase, family 31; COG: COG1501; Pfam: PF01055; InterPro: IPR000322; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.416
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.