STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cps1EAcyltransferase; Pfam: PF01757. (323 aa)    
Predicted Functional Partners:
wbaP
Undecaprenyl-phosphate galactose phosphotransferase, WbaP; COG: COG2148; Pfam: PF02397; InterPro: IPR003362.
  
  
 0.763
yccX
Acylphosphatase; COG: COG1254; Pfam: PF00708; InterPro: IPR001792.
       0.507
rlmI
23S rRNA m5C1962 methyltransferase; COG: COG1092; Pfam: PF03602; InterPro: IPR002478.
       0.470
wza
Polysaccharide biosynthesis/export protein; COG: COG1596; Pfam: PF02563; InterPro: IPR003715.
  
  
 0.462
hspQ
Hemimethylated DNA binding domain protein; Involved in the degradation of certain denaturated proteins, including DnaA, during heat shock stress; Belongs to the HspQ family.
       0.419
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.