STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccSTIGR01666 family membrane protein; COG: COG1289; Pfam: PF05976; InterPro: IPR010019. (711 aa)    
Predicted Functional Partners:
YccF
Hypothetical protein; COG: COG3304; Pfam: PF03733; InterPro: IPR005185.
  
  
 0.777
YihD
Hypothetical protein; COG: COG3084; Pfam: PF06288; InterPro: IPR009383.
  
     0.590
yhhQ
Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
  
     0.585
iscU
FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
   
    0.579
EFE93580.1
Tat pathway signal sequence domain protein; COG: COG2431; Pfam: PF03956; InterPro: IPR005642.
  
     0.513
helD
UvrD/REP helicase; COG: COG0210; Pfam: PF00580; InterPro: IPR000212.
       0.487
EFE97991.1
Hypothetical protein; COG: COG1073; Pfam: PF06500; InterPro: IPR010520; 3.1.-.-; Belongs to the UPF0255 family.
  
     0.419
EFE94250.1
Hypothetical protein; COG: COG3009; Pfam: PF03886; InterPro: IPR005586.
  
     0.405
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.