STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompA4Tat pathway signal sequence domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily. (364 aa)    
Predicted Functional Partners:
skp
Outer membrane protein; COG: COG2825; Pfam: PF03938; InterPro: IPR005632; Belongs to the skp family.
  
 
 0.936
ompN
Gram-negative porin; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
 0.841
ompN4
Gram-negative porin; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
 0.831
ompN-2
Outer membrane protein N; COG: COG3203; Pfam: PF00267; InterPro: IPR001702; Belongs to the Gram-negative porin family.
  
 0.829
EFE96999.1
Hypothetical protein; Pfam: PF07676; InterPro: IPR011042.
 
 
 0.785
pal
Peptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.783
ompA3
OmpA-like transmembrane domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
0.769
matP
Hypothetical protein; Required for spatial organization of the terminus region of the chromosome (Ter macrodomain) during the cell cycle. Prevents early segregation of duplicated Ter macrodomains during cell division. Binds specifically to matS, which is a 13 bp signature motif repeated within the Ter macrodomain.
  
     0.740
ctc
Ribosomal L25p family protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family.
  
   0.739
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.736
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.