STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YybR_5Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577. (177 aa)    
Predicted Functional Partners:
fabF-3
Beta-ketoacyl-acyl-carrier-protein synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.778
attZ
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.758
YybR_1
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.754
YtcD_1
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.748
YybR_4
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.740
YtcD_2
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.729
HxlR
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.706
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
    0.518
fabA
Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
       0.504
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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