STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vtaK2NlpC/P60 family protein; COG: COG1310; Pfam: PF00877; InterPro: IPR000555. (239 aa)    
Predicted Functional Partners:
EFE93949.1
Phage minor tail protein; COG: COG4718; Pfam: PF05939; InterPro: IPR010265.
 
  
 0.980
EFE93948.1
Phage minor tail protein L; COG: COG4672; Pfam: PF05100; InterPro: IPR006487.
 
  
 0.979
EFE96610.1
Phage tail tape measure protein, lambda family; COG: COG5281; Pfam: PF06791; InterPro: IPR006431.
 
  
 0.929
EFE96611.1
Phage minor tail protein; COG: COG4718; Pfam: PF05939; InterPro: IPR010265.
 
  
 0.917
EFE96612.1
Phage minor tail protein L; COG: COG4672; Pfam: PF05100; InterPro: IPR006487.
 
  
 0.913
EFE96616.1
Hypothetical protein; COG: COG4733.
 
    0.913
EFE93945.1
Hypothetical protein; COG: COG4733.
 
    0.913
EFE96615.1
Bacteriophage lambda tail assembly protein I; COG: COG4723; Pfam: PF06805; InterPro: IPR010654.
 
    0.906
EFE93946.1
Bacteriophage lambda tail assembly protein I; COG: COG4723; Pfam: PF06805; InterPro: IPR010654.
 
    0.906
selB
Selenocysteine-specific translation elongation factor; COG: COG3276; Pfam: PF00009,PF03144,PF09106,PF09107; InterPro: IPR004535.
   
 0.880
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.