STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE93950.1Phage tail tape measure protein, TP901 family; COG: COG5281; InterPro: IPR010090. (1132 aa)    
Predicted Functional Partners:
EFE93949.1
Phage minor tail protein; COG: COG4718; Pfam: PF05939; InterPro: IPR010265.
 
     0.839
EFE93948.1
Phage minor tail protein L; COG: COG4672; Pfam: PF05100; InterPro: IPR006487.
 
     0.834
vtaK2
NlpC/P60 family protein; COG: COG1310; Pfam: PF00877; InterPro: IPR000555.
 
  
 0.832
EFE95097.1
Hypothetical protein; Pfam: PF05488.
 
 
 0.774
EFE98354.1
Hypothetical protein; COG: COG3335; Pfam: PF00665.
  
     0.746
traI
Conjugative transfer relaxase protein TraI; COG: COG0507; Pfam: PF08751,PF07057; InterPro: IPR014129.
  
 
 0.725
EFE94570.1
Hypothetical protein.
  
     0.711
EFE97975.1
TENA/THI-4 family protein; Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway. Thus, catalyzes the conversion of 4- amino-5-aminomethyl-2-methylpyrimidine to 4-amino-5-hydroxymethyl-2- methylpyrimidine (HMP); Belongs to the TenA family.
 
     0.666
ltrA
Low temperature requirement protein LtrA; COG: COG4292; Pfam: PF06772; InterPro: IPR010640.
  
     0.627
EFE94852.1
Hydrolase, alpha/beta domain protein; Pfam: PF00561.
  
     0.601
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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