STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clpP-3Endopeptidase Clp; COG: COG0740; Pfam: PF00574; InterPro: IPR001907; Belongs to the peptidase S14 family. (214 aa)    
Predicted Functional Partners:
EFE93959.1
Phage major capsid protein, HK97 family; InterPro: IPR006444.
 
    0.917
EFE93961.1
Phage portal protein, HK97 family; COG: COG4695; Pfam: PF04860; InterPro: IPR006944.
 
  
 0.900
EFE93957.1
Putative phage DNA packaging protein.
 
    0.897
EFE93962.1
Phage terminase, small subunit, P27 family; COG: COG4626; Pfam: PF05119,PF03354; InterPro: IPR005021.
 
    0.888
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 
 0.886
EFE98325.1
Phage portal protein, HK97 family; COG: COG4695; Pfam: PF04860; InterPro: IPR006944.
 
  
 0.799
clpA
ATP-dependent Clp protease ATP-binding subunit ClpA; COG: COG0542; Pfam: PF02861,PF00004,PF07724; InterPro: IPR013461; Belongs to the ClpA/ClpB family.
   
 
 0.792
EFE93956.1
Putative phage head-tail adaptor.
  
    0.773
EFE93954.1
Phage protein, HK97 gp10 family; Pfam: PF07772; InterPro: IPR010064.
       0.770
EFE93955.1
Hypothetical protein.
       0.757
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.